Detailed information of SNP:
|
SNP ID:
sf1219371915(Gbrowse)
Chromosome: chr12 Position: 19371915 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 70.48% | 29.52% |
| All Indica | 797 | 52.20% | 47.80% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 41.60% | 58.40% |
| Indica II | 212 | 72.64% | 27.36% |
| Indica Intermediate | 210 | 50.48% | 49.52% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219371915 | C->T | INTERGENIC | None |