Detailed information of SNP:
|
SNP ID:
sf1219380387(Gbrowse)
Chromosome: chr12 Position: 19380387 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 67.42% | 32.58% |
| All Indica | 798 | 51.63% | 48.37% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 61.33% | 38.67% |
| Indica II | 213 | 37.09% | 62.91% |
| Indica Intermediate | 210 | 49.05% | 50.95% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219380387 | C->T | INTERGENIC | None |