Detailed information of SNP:



SNP ID: sf1219381893(Gbrowse)

Chromosome: chr12

Position: 19381893
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 83.79% 16.21%
All Indica799 96.75% 3.25%
All Japonica497 59.96% 40.04%
Aus67 100.00% 0.00%
Indica I375 97.87% 2.13%
Indica II213 99.06% 0.94%
Indica Intermediate211 92.42% 7.58%
Temperate Japonica335 44.48% 55.52%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate68 83.82% 16.18%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 88.10% 11.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1219381893 T->C INTERGENIC None