Detailed information of SNP:



SNP ID: sf1219382291(Gbrowse)

Chromosome: chr12

Position: 19382291
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1413 62.92% 37.08%
All Indica794 74.06% 25.94%
All Japonica496 43.55% 56.45%
Aus67 95.52% 4.48%
Indica I371 77.09% 22.91%
Indica II213 77.46% 22.54%
Indica Intermediate210 65.24% 34.76%
Temperate Japonica334 57.49% 42.51%
Tropical Japonica94 5.32% 94.68%
Japonica Intermediate68 27.94% 72.06%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 50.00% 50.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1219382291 C->T INTERGENIC None