Detailed information of SNP:
|
SNP ID:
sf1219382291(Gbrowse)
Chromosome: chr12 Position: 19382291 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 62.92% | 37.08% |
| All Indica | 794 | 74.06% | 25.94% |
| All Japonica | 496 | 43.55% | 56.45% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 77.09% | 22.91% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 210 | 65.24% | 34.76% |
| Temperate Japonica | 334 | 57.49% | 42.51% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219382291 | C->T | INTERGENIC | None |