Detailed information of SNP:
|
SNP ID:
sf1219408578(Gbrowse)
Chromosome: chr12 Position: 19408578 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.91% | 9.09% |
| All Indica | 799 | 86.36% | 13.64% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 79.73% | 20.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219408578 | G->T | LOC_Os12g32200(LOC_Os12g32200.1) | INTRON |