Detailed information of SNP:
SNP ID:
sf1219474554(Gbrowse)
Chromosome: chr12 Position: 19474554 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1408 | 73.30% | 26.70% |
All Indica | 798 | 95.74% | 4.26% |
All Japonica | 488 | 35.66% | 64.34% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 97.33% | 2.67% |
Indica II | 213 | 99.06% | 0.94% |
Indica Intermediate | 210 | 89.52% | 10.48% |
Temperate Japonica | 327 | 46.79% | 53.21% |
Tropical Japonica | 93 | 4.30% | 95.70% |
Japonica Intermediate | 68 | 25.00% | 75.00% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1219474554 | T->A | LOC_Os12g32310(LOC_Os12g32310.1) | INTRON |