Detailed information of SNP:



SNP ID: sf1219474554(Gbrowse)

Chromosome: chr12

Position: 19474554
Major allele: A

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1408 73.30% 26.70%
All Indica798 95.74% 4.26%
All Japonica488 35.66% 64.34%
Aus67 100.00% 0.00%
Indica I375 97.33% 2.67%
Indica II213 99.06% 0.94%
Indica Intermediate210 89.52% 10.48%
Temperate Japonica327 46.79% 53.21%
Tropical Japonica93 4.30% 95.70%
Japonica Intermediate68 25.00% 75.00%
Group VI/Aromatic14 7.14% 92.86%
Intermediate41 63.41% 36.59%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1219474554 T->A LOC_Os12g32310(LOC_Os12g32310.1) INTRON