Detailed information of SNP:
|
SNP ID:
sf1219482279(Gbrowse)
Chromosome: chr12 Position: 19482279 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 97.14% | 2.86% |
| All Indica | 791 | 96.08% | 3.92% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 57 | 91.23% | 8.77% |
| Indica I | 370 | 98.38% | 1.62% |
| Indica II | 210 | 93.81% | 6.19% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219482279 | A->G | INTERGENIC | None |