Detailed information of SNP:
|
SNP ID:
sf1219515398(Gbrowse)
Chromosome: chr12 Position: 19515398 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1341 | 98.06% | 1.94% |
| All Indica | 796 | 99.87% | 0.13% |
| All Japonica | 428 | 94.39% | 5.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 295 | 92.20% | 7.80% |
| Tropical Japonica | 76 | 100.00% | 0.00% |
| Japonica Intermediate | 57 | 98.25% | 1.75% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219515398 | G->A | LOC_Os12g32390(LOC_Os12g32390.1) | Non-Synonymous SNP |