Detailed information of SNP:
SNP ID:
sf1219515398(Gbrowse)
Chromosome: chr12 Position: 19515398 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1341 | 98.06% | 1.94% |
All Indica | 796 | 99.87% | 0.13% |
All Japonica | 428 | 94.39% | 5.61% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 212 | 100.00% | 0.00% |
Indica Intermediate | 209 | 100.00% | 0.00% |
Temperate Japonica | 295 | 92.20% | 7.80% |
Tropical Japonica | 76 | 100.00% | 0.00% |
Japonica Intermediate | 57 | 98.25% | 1.75% |
Group VI/Aromatic | 13 | 92.31% | 7.69% |
Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1219515398 | G->A | LOC_Os12g32390(LOC_Os12g32390.1) | Non-Synonymous SNP |