Detailed information of SNP:
|
SNP ID:
sf1219525722(Gbrowse)
Chromosome: chr12 Position: 19525722 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 60.77% | 39.23% |
| All Indica | 791 | 84.96% | 15.04% |
| All Japonica | 497 | 21.53% | 78.47% |
| Aus | 63 | 95.24% | 4.76% |
| Indica I | 372 | 94.09% | 5.91% |
| Indica II | 210 | 76.19% | 23.81% |
| Indica Intermediate | 209 | 77.51% | 22.49% |
| Temperate Japonica | 335 | 25.97% | 74.03% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219525722 | T->C | LOC_Os12g32420(LOC_Os12g32420.1) | Synonymous |