Detailed information of SNP:
|
SNP ID:
sf1219525956(Gbrowse)
Chromosome: chr12 Position: 19525956 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 83.83% | 16.17% |
| All Indica | 799 | 82.73% | 17.27% |
| All Japonica | 477 | 88.26% | 11.74% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 54.46% | 45.54% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 319 | 85.27% | 14.73% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 85.94% | 14.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219525956 | T->C | LOC_Os12g32420(LOC_Os12g32420.1) | Synonymous |