Detailed information of SNP:
|
SNP ID:
sf1219528222(Gbrowse)
Chromosome: chr12 Position: 19528222 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 64.20% | 35.80% |
| All Indica | 776 | 89.95% | 10.05% |
| All Japonica | 494 | 21.46% | 78.54% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 363 | 92.01% | 7.99% |
| Indica II | 205 | 92.20% | 7.80% |
| Indica Intermediate | 208 | 84.13% | 15.87% |
| Temperate Japonica | 332 | 25.60% | 74.40% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219528222 | T->C | INTERGENIC | None |