Detailed information of SNP:
|
SNP ID:
sf1219529810(Gbrowse)
Chromosome: chr12 Position: 19529810 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 81.27% | 18.73% |
| All Indica | 797 | 82.81% | 17.19% |
| All Japonica | 497 | 80.48% | 19.52% |
| Aus | 65 | 61.54% | 38.46% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 212 | 52.83% | 47.17% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 75.22% | 24.78% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219529810 | T->C | LOC_Os12g32430(LOC_Os12g32430.1) | Synonymous |