Detailed information of SNP:
|
SNP ID:
sf1219538371(Gbrowse)
Chromosome: chr12 Position: 19538371 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 81.54% | 18.46% |
| All Indica | 794 | 82.87% | 17.13% |
| All Japonica | 497 | 80.68% | 19.32% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 208 | 47.60% | 52.40% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 75.22% | 24.78% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219538371 | T->G | INTERGENIC | None |