Detailed information of SNP:
|
SNP ID:
sf1219542250(Gbrowse)
Chromosome: chr12 Position: 19542250 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 85.51% | 14.49% |
| All Indica | 793 | 88.15% | 11.85% |
| All Japonica | 497 | 81.09% | 18.91% |
| Aus | 55 | 85.45% | 14.55% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 210 | 65.24% | 34.76% |
| Indica Intermediate | 209 | 89.95% | 10.05% |
| Temperate Japonica | 335 | 75.52% | 24.48% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219542250 | T->C | LOC_Os12g32440(LOC_Os12g32440.1) | Synonymous |