Detailed information of SNP:
|
SNP ID:
sf1219544396(Gbrowse)
Chromosome: chr12 Position: 19544396 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1377 | 81.34% | 18.66% |
| All Indica | 792 | 78.16% | 21.84% |
| All Japonica | 463 | 88.34% | 11.66% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 373 | 90.62% | 9.38% |
| Indica II | 209 | 49.28% | 50.72% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 305 | 84.92% | 15.08% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 64 | 89.06% | 10.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219544396 | A->G | LOC_Os12g32440(LOC_Os12g32440.1) | INTRON |