Detailed information of SNP:
|
SNP ID:
sf1219555206(Gbrowse)
Chromosome: chr12 Position: 19555206 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 59.64% | 40.36% |
| All Indica | 786 | 91.73% | 8.27% |
| All Japonica | 496 | 7.86% | 92.14% |
| Aus | 48 | 95.83% | 4.17% |
| Indica I | 373 | 95.44% | 4.56% |
| Indica II | 204 | 91.67% | 8.33% |
| Indica Intermediate | 209 | 85.17% | 14.83% |
| Temperate Japonica | 335 | 6.87% | 93.13% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 19.40% | 80.60% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219555206 | A->T | LOC_Os12g32450(LOC_Os12g32450.1) | INTRON |