Detailed information of SNP:
|
SNP ID:
sf1219561874(Gbrowse)
Chromosome: chr12 Position: 19561874 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 92.80% | 7.20% |
| All Indica | 797 | 93.98% | 6.02% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 373 | 94.64% | 5.36% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219561874 | A->G | INTERGENIC | None |