Detailed information of SNP:
|
SNP ID:
sf1219563206(Gbrowse)
Chromosome: chr12 Position: 19563206 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 91.32% | 8.68% |
| All Indica | 797 | 93.22% | 6.78% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219563206 | G->C | INTERGENIC | None |