Detailed information of SNP:
|
SNP ID:
sf1219564515(Gbrowse)
Chromosome: chr12 Position: 19564515 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 91.18% | 8.82% |
| All Indica | 797 | 93.35% | 6.65% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219564515 | T->A | INTERGENIC | None |