Detailed information of SNP:
|
SNP ID:
sf1219564784(Gbrowse)
Chromosome: chr12 Position: 19564784 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 91.77% | 8.23% |
| All Indica | 796 | 93.34% | 6.66% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 61 | 14.75% | 85.25% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219564784 | A->G | INTERGENIC | None |