Detailed information of SNP:
|
SNP ID:
sf1219570096(Gbrowse)
Chromosome: chr12 Position: 19570096 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1358 | 94.18% | 5.82% |
| All Indica | 795 | 100.00% | 0.00% |
| All Japonica | 444 | 82.43% | 17.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 302 | 75.50% | 24.50% |
| Tropical Japonica | 81 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 93.44% | 6.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219570096 | T->C | LOC_Os12g32470(LOC_Os12g32470.1) | INTRON |