Detailed information of SNP:
|
SNP ID:
sf1219598494(Gbrowse)
Chromosome: chr12 Position: 19598494 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 63.71% | 36.29% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 497 | 12.07% | 87.93% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 13.73% | 86.27% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219598494 | T->A | INTERGENIC | None |