Detailed information of SNP:
|
SNP ID:
sf1219603299(Gbrowse)
Chromosome: chr12 Position: 19603299 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 51.49% | 48.51% |
| All Indica | 796 | 20.35% | 79.65% |
| All Japonica | 495 | 97.58% | 2.42% |
| Aus | 65 | 64.62% | 35.38% |
| Indica I | 374 | 11.76% | 88.24% |
| Indica II | 211 | 28.44% | 71.56% |
| Indica Intermediate | 211 | 27.49% | 72.51% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219603299 | G->A | INTERGENIC | None |