Detailed information of SNP:
|
SNP ID:
sf1219617154(Gbrowse)
Chromosome: chr12 Position: 19617154 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 65.47% | 34.53% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 18.51% | 81.49% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 21.49% | 78.51% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219617154 | T->C | LOC_Os12g32544(LOC_Os12g32544.1) | UTR_5_PRIME |