Detailed information of SNP:
|
SNP ID:
sf1219634262(Gbrowse)
Chromosome: chr12 Position: 19634262 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 93.22% | 6.78% |
| All Indica | 796 | 91.71% | 8.29% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 78.30% | 21.70% |
| Indica Intermediate | 209 | 93.30% | 6.70% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219634262 | G->A | INTERGENIC | None |