Detailed information of SNP:
|
SNP ID:
sf1219634281(Gbrowse)
Chromosome: chr12 Position: 19634281 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 59.70% | 40.30% |
| All Indica | 797 | 95.11% | 4.89% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219634281 | T->C | INTERGENIC | None |