Detailed information of SNP:
|
SNP ID:
sf1219689073(Gbrowse)
Chromosome: chr12 Position: 19689073 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 90.47% | 9.53% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 477 | 74.00% | 26.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 323 | 91.95% | 8.05% |
| Tropical Japonica | 88 | 25.00% | 75.00% |
| Japonica Intermediate | 66 | 51.52% | 48.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219689073 | T->A | LOC_Os12g32670(LOC_Os12g32670.1) | UTR_3_PRIME |