Detailed information of SNP:
SNP ID:
sf1219689073(Gbrowse)
Chromosome: chr12 Position: 19689073 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1396 | 90.47% | 9.53% |
All Indica | 798 | 99.37% | 0.63% |
All Japonica | 477 | 74.00% | 26.00% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 98.59% | 1.41% |
Indica Intermediate | 210 | 99.52% | 0.48% |
Temperate Japonica | 323 | 91.95% | 8.05% |
Tropical Japonica | 88 | 25.00% | 75.00% |
Japonica Intermediate | 66 | 51.52% | 48.48% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1219689073 | T->A | LOC_Os12g32670(LOC_Os12g32670.1) | UTR_3_PRIME |