Detailed information of SNP:
|
SNP ID:
sf1219690702(Gbrowse)
Chromosome: chr12 Position: 19690702 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 53.00% | 47.00% |
| All Indica | 798 | 85.96% | 14.04% |
| All Japonica | 496 | 2.82% | 97.18% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 374 | 92.78% | 7.22% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 21.43% | 78.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219690702 | T->G | LOC_Os12g32670(LOC_Os12g32670.1) | UTR_5_PRIME |