Detailed information of SNP:



SNP ID: sf1219690702(Gbrowse)

Chromosome: chr12

Position: 19690702
Major allele: G

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1417 53.00% 47.00%
All Indica798 85.96% 14.04%
All Japonica496 2.82% 97.18%
Aus67 61.19% 38.81%
Indica I374 92.78% 7.22%
Indica II213 94.84% 5.16%
Indica Intermediate211 64.93% 35.07%
Temperate Japonica335 1.79% 98.21%
Tropical Japonica94 3.19% 96.81%
Japonica Intermediate67 7.46% 92.54%
Group VI/Aromatic14 7.14% 92.86%
Intermediate42 21.43% 78.57%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1219690702 T->G LOC_Os12g32670(LOC_Os12g32670.1) UTR_5_PRIME