Detailed information of SNP:
|
SNP ID:
sf1219699349(Gbrowse)
Chromosome: chr12 Position: 19699349 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 77.60% | 22.40% |
| All Indica | 756 | 60.71% | 39.29% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 353 | 45.89% | 54.11% |
| Indica II | 198 | 69.19% | 30.81% |
| Indica Intermediate | 205 | 78.05% | 21.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219699349 | G->A | INTERGENIC | None |