Detailed information of SNP:
|
SNP ID:
sf1219707155(Gbrowse)
Chromosome: chr12 Position: 19707155 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 59.38% | 40.62% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 487 | 14.58% | 85.42% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 326 | 16.56% | 83.44% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 19.40% | 80.60% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 42 | 16.67% | 83.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219707155 | C->T | LOC_Os12g32690(LOC_Os12g32690.1) | INTRON |