Detailed information of SNP:
|
SNP ID:
sf1219708197(Gbrowse)
Chromosome: chr12 Position: 19708197 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 54.16% | 45.84% |
| All Indica | 798 | 93.48% | 6.52% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 19.05% | 80.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219708197 | A->G | LOC_Os12g32690(LOC_Os12g32690.1) | INTRON |