Detailed information of SNP:
|
SNP ID:
sf1219716557(Gbrowse)
Chromosome: chr12 Position: 19716557 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 56.96% | 43.04% |
| All Indica | 771 | 27.24% | 72.76% |
| All Japonica | 495 | 98.18% | 1.82% |
| Aus | 65 | 70.77% | 29.23% |
| Indica I | 366 | 19.40% | 80.60% |
| Indica II | 200 | 22.50% | 77.50% |
| Indica Intermediate | 205 | 45.85% | 54.15% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219716557 | A->C | INTERGENIC | None |