Detailed information of SNP:
|
SNP ID:
sf1219716593(Gbrowse)
Chromosome: chr12 Position: 19716593 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 60.17% | 39.83% |
| All Indica | 782 | 32.35% | 67.65% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 371 | 23.99% | 76.01% |
| Indica II | 205 | 27.32% | 72.68% |
| Indica Intermediate | 206 | 52.43% | 47.57% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219716593 | C->A | INTERGENIC | None |