Detailed information of SNP:
|
SNP ID:
sf1219719614(Gbrowse)
Chromosome: chr12 Position: 19719614 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 56.33% | 43.67% |
| All Indica | 795 | 28.30% | 71.70% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 66 | 51.52% | 48.48% |
| Indica I | 372 | 23.39% | 76.61% |
| Indica II | 212 | 21.70% | 78.30% |
| Indica Intermediate | 211 | 43.60% | 56.40% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219719614 | T->A | LOC_Os12g32700(LOC_Os12g32700.1) | INTRON |