Detailed information of SNP:
|
SNP ID:
sf1219720374(Gbrowse)
Chromosome: chr12 Position: 19720374 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 54.62% | 45.38% |
| All Indica | 789 | 87.33% | 12.67% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 373 | 89.28% | 10.72% |
| Indica II | 209 | 92.82% | 7.18% |
| Indica Intermediate | 207 | 78.26% | 21.74% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219720374 | C->T | LOC_Os12g32700(LOC_Os12g32700.1) | INTRON |