Detailed information of SNP:
|
SNP ID:
sf1219722766(Gbrowse)
Chromosome: chr12 Position: 19722766 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1354 | 54.80% | 45.20% |
| All Indica | 758 | 75.59% | 24.41% |
| All Japonica | 496 | 21.77% | 78.23% |
| Aus | 46 | 93.48% | 6.52% |
| Indica I | 347 | 78.39% | 21.61% |
| Indica II | 208 | 79.81% | 20.19% |
| Indica Intermediate | 203 | 66.50% | 33.50% |
| Temperate Japonica | 334 | 26.65% | 73.35% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219722766 | C->T | INTERGENIC | None |