Detailed information of SNP:
|
SNP ID:
sf1219730648(Gbrowse)
Chromosome: chr12 Position: 19730648 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 57.86% | 42.14% |
| All Indica | 799 | 92.37% | 7.63% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219730648 | G->A | INTERGENIC | None |