Detailed information of SNP:
|
SNP ID:
sf1219730925(Gbrowse)
Chromosome: chr12 Position: 19730925 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 57.93% | 42.07% |
| All Indica | 799 | 92.37% | 7.63% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219730925 | T->C | INTERGENIC | None |