Detailed information of SNP:
|
SNP ID:
sf1219732239(Gbrowse)
Chromosome: chr12 Position: 19732239 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 65.68% | 34.32% |
| All Indica | 799 | 92.99% | 7.01% |
| All Japonica | 496 | 22.78% | 77.22% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 334 | 26.95% | 73.05% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219732239 | A->G | INTERGENIC | None |