Detailed information of SNP:
|
SNP ID:
sf1219733176(Gbrowse)
Chromosome: chr12 Position: 19733176 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 65.28% | 34.72% |
| All Indica | 798 | 92.73% | 7.27% |
| All Japonica | 497 | 22.54% | 77.46% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 335 | 26.87% | 73.13% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219733176 | A->G | INTERGENIC | None |