Detailed information of SNP:
|
SNP ID:
sf1219733378(Gbrowse)
Chromosome: chr12 Position: 19733378 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 65.30% | 34.70% |
| All Indica | 799 | 92.62% | 7.38% |
| All Japonica | 497 | 22.54% | 77.46% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 26.87% | 73.13% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219733378 | G->T | INTERGENIC | None |