Detailed information of SNP:
|
SNP ID:
sf1219750187(Gbrowse)
Chromosome: chr12 Position: 19750187 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 66.29% | 33.71% |
| All Indica | 799 | 92.37% | 7.63% |
| All Japonica | 496 | 22.18% | 77.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 334 | 26.35% | 73.65% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219750187 | T->C | INTERGENIC | None |