Detailed information of SNP:
|
SNP ID:
sf1219750712(Gbrowse)
Chromosome: chr12 Position: 19750712 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 66.15% | 33.85% |
| All Indica | 798 | 92.36% | 7.64% |
| All Japonica | 497 | 22.13% | 77.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 26.27% | 73.73% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219750712 | G->A | INTERGENIC | None |