Detailed information of SNP:
|
SNP ID:
sf1219759339(Gbrowse)
Chromosome: chr12 Position: 19759339 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 67.51% | 32.49% |
| All Indica | 799 | 45.68% | 54.32% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 63.73% | 36.27% |
| Indica II | 213 | 8.45% | 91.55% |
| Indica Intermediate | 211 | 51.18% | 48.82% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219759339 | A->T | INTERGENIC | None |