Detailed information of SNP:
|
SNP ID:
sf1219765691(Gbrowse)
Chromosome: chr12 Position: 19765691 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1357 | 71.55% | 28.45% |
| All Indica | 752 | 52.93% | 47.07% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 56 | 64.29% | 35.71% |
| Indica I | 358 | 72.91% | 27.09% |
| Indica II | 198 | 12.12% | 87.88% |
| Indica Intermediate | 196 | 57.65% | 42.35% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219765691 | C->T | INTERGENIC | None |