Detailed information of SNP:
|
SNP ID:
sf1219767035(Gbrowse)
Chromosome: chr12 Position: 19767035 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1376 | 96.66% | 3.34% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 456 | 90.13% | 9.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 300 | 87.33% | 12.67% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 88.71% | 11.29% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219767035 | A->G | INTERGENIC | None |