Detailed information of SNP:
|
SNP ID:
sf1219767586(Gbrowse)
Chromosome: chr12 Position: 19767586 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 65.56% | 34.44% |
| All Indica | 797 | 45.92% | 54.08% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 373 | 63.00% | 37.00% |
| Indica II | 213 | 9.39% | 90.61% |
| Indica Intermediate | 211 | 52.61% | 47.39% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219767586 | G->A | INTERGENIC | None |