Detailed information of SNP:
|
SNP ID:
sf1219773230(Gbrowse)
Chromosome: chr12 Position: 19773230 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 86.46% | 13.54% |
| All Indica | 795 | 79.25% | 20.75% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 64 | 78.12% | 21.88% |
| Indica I | 373 | 87.13% | 12.87% |
| Indica II | 212 | 58.96% | 41.04% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219773230 | C->T | INTERGENIC | None |