Detailed information of SNP:
|
SNP ID:
sf1219787527(Gbrowse)
Chromosome: chr12 Position: 19787527 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 56.45% | 43.55% |
| All Indica | 789 | 88.59% | 11.41% |
| All Japonica | 494 | 6.68% | 93.32% |
| Aus | 66 | 63.64% | 36.36% |
| Indica I | 372 | 91.13% | 8.87% |
| Indica II | 209 | 93.78% | 6.22% |
| Indica Intermediate | 208 | 78.85% | 21.15% |
| Temperate Japonica | 333 | 6.31% | 93.69% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219787527 | T->C | LOC_Os12g32800(LOC_Os12g32800.1) | INTRON |