Detailed information of SNP:
|
SNP ID:
sf1219787569(Gbrowse)
Chromosome: chr12 Position: 19787569 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1364 | 74.27% | 25.73% |
| All Indica | 748 | 59.63% | 40.37% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 64 | 51.56% | 48.44% |
| Indica I | 348 | 38.79% | 61.21% |
| Indica II | 203 | 93.60% | 6.40% |
| Indica Intermediate | 197 | 61.42% | 38.58% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219787569 | C->T | LOC_Os12g32800(LOC_Os12g32800.1) | INTRON |